PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g061470.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 514aa    MW: 56068.7 Da    PI: 10.1298
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g061470.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-0582104123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  Csa08g061470.1  82 FVCEICNKGFQRDQNLQLHRRGH 104
                     89*******************88 PP

2zf-C2H2140.00014159181123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H +t+
  Csa08g061470.1 159 WKCEKCSKKYAVQSDWKAHAKTC 181
                     58******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-581104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.97E-781104No hitNo description
PROSITE profilePS5015710.94982104IPR007087Zinc finger, C2H2
PfamPF121718.2E-582104IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01782104IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
SMARTSM0035578124154IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.8E-5147180IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.97E-7154179No hitNo description
SMARTSM00355140159179IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MQMIPGDPFS ISSSMGGFVH QETHLHHLQQ QIPDLNPNSN PNPNAKPNSS SAKKKRNQPG  60
TPDPDADVIA LSPTTLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL KQRSKQEVIK  120
KKVYICPIKT CVHHDASRAL GDLTGIKKHY SRKHGEKKWK CEKCSKKYAV QSDWKAHAKT  180
CGTREYKCDC GTLFSRKDSF ITHRAFCDAL TEEGARMSSL SNNNTVTSAT NLNFGSDSNV  240
MNNPNLPHGF VHRGVHHSDI NAAISQFGLG FGHDLSAMHA QGLSEMVQMA STGNHHLFPS  300
SSSSLPDFSG HHLNQQFQIP TTSTNPNLTL SSSSTSQQTS ASLPSLQQQH QTGKDSSFSP  360
LFSSSSENKQ NKPLSPMSAT ALLQKAAQMG STRSNSSTAP SFFAGPTMTS SSATASPPPP  420
RSSSPMMIQQ QLNNNFNTIV SRESHNLAPP PLSGVTTNSG DNNPLQSNRS GLNPVQQMGL  480
TRDFLGVSNE HHPHQTGRRP FLPQELARFA PLG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6214940.0AJ621494.1 Arabidopsis thaliana mRNA for ID1-like zinc finger protein 3 (idz3 gene).
GenBankAJ6304930.0AJ630493.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At5g03150.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010423754.10.0PREDICTED: zinc finger protein JACKDAW-like
SwissprotQ700D20.0IDD10_ARATH; Zinc finger protein JACKDAW
TrEMBLD7M7Z80.0D7M7Z8_ARALL; Zinc finger family protein
STRINGfgenesh2_kg.6__219__AT5G03150.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.10.0C2H2-like zinc finger protein